PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AS_3C6511D69.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 64aa    MW: 7425.4 Da    PI: 10.6568
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AS_3C6511D69.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-112963137
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                           r rW +eE+e+++da  ++G + W++I +++  ++t+
  Traes_3AS_3C6511D69.1 29 RERWCPEEHERFLDALLRFGRD-WRKIEEHVR-TKTA 63
                           78******************77.*********.9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-101863IPR009057Homeodomain-like
PROSITE profilePS5129412.2622464IPR017930Myb domain
TIGRFAMsTIGR015577.3E-82860IPR006447Myb domain, plants
PfamPF002492.1E-82963IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-62963IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MAERGGGGEG TSSSPGKKAR KPYTITRPRE RWCPEEHERF LDALLRFGRD WRKIEEHVRT  60
KTAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-59HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565211.13e-26PREDICTED: protein REVEILLE 6-like
SwissprotQ6R0H18e-18LHY_ARATH; Protein LHY
TrEMBLW5CJQ52e-40W5CJQ5_WHEAT; Uncharacterized protein
TrEMBLM8AE972e-39M8AE97_TRIUA; Transcription factor ASG4
STRINGMLOC_59912.13e-30(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.43e-19MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]